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A function to extract specific model output parameters from result

Source: R/extract.R
extract.Rd

A function to extract specific model output parameters from result

Usage

extract(mod, par)

Arguments

mod

Output from cnp_mod_mcmc()

par

Character vector specifying which output parameter that should be returned.

Value

Main model output parameters:

  • F0c: C-specific minimal inorganic flux (g/day)

  • F0n: N-specific minimal inorganic flux (g/day)

  • F0p: P-specific minimal inorganic flux (g/day)

  • Gc: Carbon-specific growth rate (g/day)

  • Gn: Nitrogen-specific growth rate (g/day)

  • Gp: Phosphorus-specific growth rate (g/day)

  • Sc: C-specific minimal supply rate (g/day)

  • Sn: N-specific minimal supply rate (g/day)

  • Sp: P-specific minimal supply rate (g/day)

  • Ic: Ingestion rate of C (g/day)

  • In: Ingestion rate of N (g/day)

  • Ip: Ingestion rate of P (g/day)

  • Wc: Egestion rate of C (g/day)

  • Wn: Egestion rate of N (g/day)

  • Wp: Egestion rate of P (g/day)

  • Fc: Total inorganic flux of C (respiration) (g/day)

  • Fn: Total inorganic flux of N (excretion) (g/day)

  • Fp: Total inorganic flux of P (excretion) (g/day)

Returns a data.frame with a summary of the selected output parameters

Examples

model <- cnp_model_mcmc(TL = 5:10, param = list(Qc_m = 40, Qn_m = 10, Qp_m = 4))
#> Warning: all scheduled cores encountered errors in user code
#> Error in x[[2]]: subscript out of bounds
extract(model, c("Fn","Fp"))
#> Error: object 'model' not found